Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MARCH6E3 ubiquitin-protein ligase MARCH6. (872 aa)    
Predicted Functional Partners:
UBE2G2
Ubiquitin-conjugating enzyme E2 G2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.992
SYVN1
E3 ubiquitin-protein ligase synoviolin B.
    
 0.992
T06_1079
Ubiquitin fusion degradation protein 1-like protein.
    
 0.968
Necap1
Ubiquitin-conjugating enzyme E2 J2.
    
 
 0.958
TER94
Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.
    
 0.940
SPATA5
Spermatogenesis-associated protein 5.
    
 0.940
cup-2
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.938
DERL2
Derlin-2.
    
 0.936
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.930
CNOT2-2
CCR4-NOT transcription complex subunit 2.
    
 0.930
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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