Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nabNGFI-A-binding-like protein. (506 aa)    
Predicted Functional Partners:
rn
Zinc finger protein rotund.
    
 0.974
CHD3
Chromodomain-helicase-DNA-binding protein 3.
    
 0.744
cbx
Protein crossbronx.
    
   0.662
hb
Hunchback-like protein.
    
 0.634
gli4
Zinc finger protein GLI4.
    
 0.540
T06_1333
Uncharacterized protein.
    
 0.539
T06_10098
Uncharacterized protein.
    
 0.539
ZBTB14
Zinc finger and BTB domain-containing protein 14.
    
 0.539
T06_14160
Uncharacterized protein.
    
 0.539
egr1
Early growth response protein 1.
    
 0.539
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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