Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hoipRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (116 aa)    
Predicted Functional Partners:
NOP58
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
   
 0.999
NOP56
Nucleolar protein 56.
   
 0.999
UTP15
U3 small nucleolar RNA-associated protein 15-like protein.
   
 0.998
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.998
fbl
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.998
Rrp9
U3 small nucleolar RNA-interacting protein 2.
   
 0.997
Snrnp200
U5 small nuclear ribonucleoprotein helicase.
   
 0.996
snr-4
Small nuclear ribonucleoprotein Sm D2.
   
 0.996
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
    
 0.996
Nop60B
H/ACA ribonucleoprotein complex subunit 4.
  
 0.996
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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