Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ppp4cbSerine/threonine-protein phosphatase. (307 aa)    
Predicted Functional Partners:
Smek1
Serine/threonine-protein phosphatase 4 regulatory subunit 3A.
   
 0.997
Ppp4r1
Serine/threonine-protein phosphatase 4 regulatory subunit 1.
    
 0.993
IGBP1
Immunoglobulin-binding protein 1.
    
 0.990
T06_12501
Uncharacterized protein.
   
 0.987
PPP4R2r
Serine/threonine-protein phosphatase 4 regulatory subunit 2.
   
 0.987
PPP4R4
Serine/threonine-protein phosphatase 4 regulatory subunit 4; Belongs to the membrane-bound acyltransferase family.
    
 0.979
PPP2R1A
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform.
   
 0.972
LCMT1
Leucine carboxyl methyltransferase 1.
    
 0.967
PPP2R4
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
 0.938
Ccdc6
Coiled-coil domain-containing protein 6.
    
 
 0.933
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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