STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_3425Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
Sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 0.678
sod1
Superoxide dismutase [Cu-Zn].
   
 0.617
T06_6387
Uncharacterized protein.
   
 0.617
SOD1
Superoxide dismutase [Cu-Zn].
   
 0.617
TXNRD1
Thioredoxin reductase 1, cytoplasmic; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
   
 0.576
Txnrd2
Thioredoxin reductase 2, mitochondrial.
   
 0.576
DLD
Dihydrolipoyl dehydrogenase.
   
 0.535
KAT8
Histone acetyltransferase KAT8.
    
 0.522
Kat7
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.522
KAT5
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.522
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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