Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Serpinb1c-2Leukocyte elastase inhibitor C; Belongs to the serpin family. (384 aa)    
Predicted Functional Partners:
Cp1
Cathepsin L; Belongs to the peptidase C1 family.
    
 0.633
CATB
Cathepsin B-like cysteine proteinase; Belongs to the peptidase C1 family.
    
 0.629
CTSZ
Cathepsin Z; Belongs to the peptidase C1 family.
    
 0.629
cpr-3-2
Cathepsin B-like cysteine proteinase 3; Belongs to the peptidase C1 family.
    
 0.629
Ace
Angiotensin-converting enzyme.
    
 0.628
Ace-2
Angiotensin-converting enzyme.
    
 0.628
Apaf1
Apoptotic protease-activating factor 1.
    
 0.624
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.600
CTSC
Dipeptidyl peptidase 1; Belongs to the peptidase C1 family.
    
 0.587
CTSC-2
Dipeptidyl peptidase 1; Belongs to the peptidase C1 family.
    
 0.587
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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