Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prfAPeptide chain release factor 1. (391 aa)    
Predicted Functional Partners:
ICT1
Peptidyl-tRNA hydrolase ICT1, mitochondrial.
   
 0.911
Pum2
Pumilio-like protein 2.
    
   0.870
BTRC
F-box/WD repeat-containing protein 1A.
    
 0.849
T06_3360
Uncharacterized protein.
    
 0.844
yars
Tyrosine--tRNA ligase.
  
  
 0.838
CDC27
Cell division cycle protein 27-like protein.
   
 0.830
mrps-16
Putative 28S ribosomal protein S16, mitochondrial.
  
 0.827
T20F5.3
Putative ribosome-recycling factor, mitochondrial.
  
 
 0.820
RpL13A
60S ribosomal protein L13a.
  
 
 0.819
T06_10203
Uncharacterized protein.
    
 0.815
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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