Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oxtXylosyltransferase oxt. (851 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
    
 0.999
ITSN1
Intersectin-1.
    
 0.973
POP4
Ribonuclease P protein subunit p29.
   
 0.956
Ddx58
Putative ATP-dependent RNA helicase DDX58.
    
 0.955
RPP30
Ribonuclease P protein subunit p30.
    
 0.954
FANCL
E3 ubiquitin-protein ligase FANCL.
    
 0.951
ran-4
Putative nuclear transport factor 2.
    
 0.929
KRI1
Protein KRI1-like protein.
    
  0.925
Dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
   
 0.924
ERCC4
DNA repair endonuclease XPF.
    
 0.917
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.