Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PLEKHM2Pleckstrin homology domain-containing family M member 2. (898 aa)    
Predicted Functional Partners:
Rad23b
UV excision repair protein RAD23-like protein B.
    
 
 0.878
Pros54
26S proteasome non-ATPase regulatory subunit 4.
   
 
 0.842
Psmd14
26S proteasome non-ATPase regulatory subunit 14.
   
 
 0.841
PSMD2
26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.
   
 
 0.820
arl8ba
ADP-ribosylation factor-like protein 8B-A.
    
 0.629
RpL40
Ubiquitin-60S ribosomal protein L40.
   
 
 0.611
UBA52
Ubiquitin-60S ribosomal protein L40.
   
 
 0.611
T06_9109
Kinesin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
     
  0.609
Vha68-2
V-type proton ATPase catalytic subunit A.
    
 
 0.593
Pros45
26S protease regulatory subunit 8.
   
   0.574
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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