Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mig-6-2Papilin. (2085 aa)    
Predicted Functional Partners:
T06_367
Putative sulfite oxidase, mitochondrial.
      
 0.728
fbl-1
Fibulin-1.
    
 0.662
Nipped-A
Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family.
     
  0.620
TAF9
Transcription initiation factor TFIID subunit 9.
     
  0.596
T06_12167
Uncharacterized protein.
     
  0.593
CCDC101
SAGA-associated factor 29-like protein.
     
  0.593
eny2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
     
  0.582
CRIM1
Cysteine-rich motor neuron 1 protein.
     
 0.503
spon1
Spondin-1.
     
 0.500
Spon1
Spondin-1.
     
 0.500
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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