Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rab14Ras-related protein Rab-14. (242 aa)    
Predicted Functional Partners:
RAB2
Ras-related protein Rab-2.
  
 
0.865
Gdi1
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.860
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.843
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.833
Trio
Triple functional domain protein.
    
 0.830
ITSN1
Intersectin-1.
    
 0.784
T06_3337
TPX2 domain-containing protein.
    
 0.762
Rab7a
Ras-related protein Rab-7a.
  
0.753
APPL1
DCC-interacting protein 13-alpha.
   
 0.739
Stam
Signal transducing adapter molecule 1.
    
 0.729
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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