Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB1ARas-related protein Rab-1A. (225 aa)    
Predicted Functional Partners:
T06_16567
MAM domain-containing protein.
   
 0.996
GBF1
Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1.
    
 0.987
STX5
Syntaxin-5; Belongs to the syntaxin family.
   
 0.986
Tbc1d20
TBC1 domain family member 20.
    
 0.985
Gdi1
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.984
TRAPPC8
Trafficking protein particle complex subunit 8.
    
 0.980
SEC22B
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
   
 0.971
TRAPPC4
Trafficking protein particle complex subunit 4.
    
 0.964
Golga2
Golgin subfamily A member 2.
    
 0.964
Trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.961
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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