Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lst-4Sorting nexin lst-4. (687 aa)    
Predicted Functional Partners:
Gak
Cyclin-G-associated kinase.
     
 0.953
dyn-1
Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.884
DNM1L
Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.884
dpy-23
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
 0.880
PR2
Tyrosine-protein kinase PR2; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 
 0.840
Pik3ca
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; Belongs to the PI3/PI4-kinase family.
    
  0.839
ITSN1
Intersectin-1.
     
 0.823
Snx2
Sorting nexin-2.
   
 0.783
Ap2b1
AP complex subunit beta.
    
 0.755
FCHO2
FCH domain only protein 2.
    
 0.739
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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