Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc88cDaple-like protein. (1702 aa)    
Predicted Functional Partners:
akt2-a
RAC-beta serine/threonine-protein kinase A; Belongs to the protein kinase superfamily.
    
 
 0.733
CTNNA2
Catenin alpha-2.
    
 
 0.690
ift122
Intraflagellar transport protein-like protein.
    
 
 0.689
abs
Dynactin subunit 1.
    
   0.582
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 
 0.572
Vars
Valine--tRNA ligase.
    
 
 0.539
UBXN7
UBX domain-containing protein 7.
    
 
 0.514
Prpf19
Pre-mRNA-processing factor 19.
    
 
 0.509
rho-1
Ras-like GTP-binding protein rhoA.
    
 0.491
Nrg-2
Neuroglian.
      
 0.490
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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