Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HID1Protein HID1. (791 aa)    
Predicted Functional Partners:
Usp7
Ubiquitin carboxyl-terminal hydrolase 7.
    
 
 0.887
Nup214
Nuclear pore complex protein.
    
 
 0.814
Nup155
Nuclear pore complex protein.
    
 
 0.814
Nup54
Nuclear pore complex protein Nup54.
    
 
 0.813
ALDH1A2
Retinal dehydrogenase 2.
    
 0.804
T06_3625
Uncharacterized protein.
    
 0.804
ALDH2
Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.
    
 0.804
NXF1
Nuclear RNA export factor 1.
    
 
 0.787
RAE1
mRNA export factor.
    
 
 0.784
PA2G4
Proliferation-associated protein 2G4.
    
   0.778
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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