NCBP2 protein (Trichinella sp. T6) - STRING interaction network

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NCBP2

Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure. (150 aa)

Predicted Functional Partners:

Cbp80

0.999

Ars2

0.998

ife-3

0.998

T06_7245

0.998

EIF4G3

0.997

tif452

0.995

snrpd3

0.989

Snrpd1

0.987

K07C5.6

0.985

U2af50

0.985

Your Current Organism:

Trichinella sp. T6

NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ars2	Cbp80	A0A0V0W3N6	A0A0V0W4J6	Serrate RNA effector molecule-like protein.	Nuclear cap-binding protein subunit 1.	0.997
Ars2	K07C5.6	A0A0V0W3N6	A0A0V0X302	Serrate RNA effector molecule-like protein.	Pre-mRNA-splicing factor SLU7.	0.906
Ars2	NCBP2	A0A0V0W3N6	A0A0V0WMP7	Serrate RNA effector molecule-like protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	0.998
Ars2	U2af50	A0A0V0W3N6	A0A0V0X6J1	Serrate RNA effector molecule-like protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.806
Cbp80	Ars2	A0A0V0W4J6	A0A0V0W3N6	Nuclear cap-binding protein subunit 1.	Serrate RNA effector molecule-like protein.	0.997
Cbp80	EIF4G3	A0A0V0W4J6	A0A0V0WBV3	Nuclear cap-binding protein subunit 1.	Eukaryotic translation initiation factor 4 gamma 3.	0.998
Cbp80	K07C5.6	A0A0V0W4J6	A0A0V0X302	Nuclear cap-binding protein subunit 1.	Pre-mRNA-splicing factor SLU7.	0.889
Cbp80	NCBP2	A0A0V0W4J6	A0A0V0WMP7	Nuclear cap-binding protein subunit 1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	0.999
Cbp80	Snrpd1	A0A0V0W4J6	A0A0V0X5K1	Nuclear cap-binding protein subunit 1.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.978
Cbp80	T06_7245	A0A0V0W4J6	A0A0V0WG10	Nuclear cap-binding protein subunit 1.	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.998
Cbp80	U2af50	A0A0V0W4J6	A0A0V0X6J1	Nuclear cap-binding protein subunit 1.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.933
Cbp80	ife-3	A0A0V0W4J6	A0A0V0W7X1	Nuclear cap-binding protein subunit 1.	Eukaryotic translation initiation factor 4E-3; Belongs to the eukaryotic initiation factor 4E family.	0.998
Cbp80	snrpd3	A0A0V0W4J6	A0A0V0WQG9	Nuclear cap-binding protein subunit 1.	Small nuclear ribonucleoprotein Sm D3.	0.980
Cbp80	tif452	A0A0V0W4J6	A0A0V0X3I9	Nuclear cap-binding protein subunit 1.	Eukaryotic translation initiation factor 4E-2; Belongs to the eukaryotic initiation factor 4E family.	0.997
EIF4G3	Cbp80	A0A0V0WBV3	A0A0V0W4J6	Eukaryotic translation initiation factor 4 gamma 3.	Nuclear cap-binding protein subunit 1.	0.998
EIF4G3	NCBP2	A0A0V0WBV3	A0A0V0WMP7	Eukaryotic translation initiation factor 4 gamma 3.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	0.997
EIF4G3	T06_7245	A0A0V0WBV3	A0A0V0WG10	Eukaryotic translation initiation factor 4 gamma 3.	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.997
EIF4G3	ife-3	A0A0V0WBV3	A0A0V0W7X1	Eukaryotic translation initiation factor 4 gamma 3.	Eukaryotic translation initiation factor 4E-3; Belongs to the eukaryotic initiation factor 4E family.	0.997
EIF4G3	tif452	A0A0V0WBV3	A0A0V0X3I9	Eukaryotic translation initiation factor 4 gamma 3.	Eukaryotic translation initiation factor 4E-2; Belongs to the eukaryotic initiation factor 4E family.	0.990
K07C5.6	Ars2	A0A0V0X302	A0A0V0W3N6	Pre-mRNA-splicing factor SLU7.	Serrate RNA effector molecule-like protein.	0.906

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