Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cdc37-2Hsp90 co-chaperone Cdc37. (341 aa)    
Predicted Functional Partners:
Hsp83
Heat shock protein 83.
    
 0.960
STIP1
Stress-induced-phosphoprotein 1.
   
 0.959
PPP5C
Serine/threonine-protein phosphatase 5.
    
 0.940
HSP90B1
Endoplasmin.
   
 0.917
TTC28
Tetratricopeptide repeat protein 28.
   
 0.875
akt2-a
RAC-beta serine/threonine-protein kinase A; Belongs to the protein kinase superfamily.
   
 0.859
csnk2a1
Casein kinase II subunit alpha.
    
 
 0.855
Tsc1
Hamartin.
    
 0.846
Tsc1-2
Hamartin.
    
 0.846
Trap1
Heat shock protein 75 kDa, mitochondrial.
    
 0.794
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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