Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ttbk1-9Tau-tubulin kinase 1. (300 aa)    
Predicted Functional Partners:
Ltv1
Protein LTV1-like protein.
    
 0.703
Tsr1
Pre-rRNA-processing protein TSR1-like protein.
    
 0.687
Per3
Period circadian-like protein 3.
    
 0.599
rps3-b
40S ribosomal protein S3-A.
    
 0.591
rps8
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.576
rps30a
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.554
RpS15Aa
40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
    
  0.552
dvl3
Segment polarity protein dishevelled-like protein DVL-3.
    
  0.546
phr
Deoxyribodipyrimidine photo-lyase.
    
 0.536
kin-19
Casein kinase I isoform alpha.
  
 
 
0.506
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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