T06_7956 protein (Trichinella sp. T6) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

T06_7956

G_PROTEIN_RECEP_F1_2 domain-containing protein. (385 aa)

Predicted Functional Partners:

unc-89-3

0.863

arr-1

0.625

lrk-1

0.596

gpb-1

0.593

Gnaq

0.545

grk-2

0.544

gpc-1

0.537

T06_12457

0.537

Snap25

0.498

plcd3a

0.457

Your Current Organism:

Trichinella sp. T6

NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gnaq	T06_12457	A0A0V0WEY0	A0A0V0X463	Guanine nucleotide-binding protein G(Q) subunit alpha.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.978
Gnaq	T06_7956	A0A0V0WEY0	A0A0V0WMX2	Guanine nucleotide-binding protein G(Q) subunit alpha.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.545
Gnaq	arr-1	A0A0V0WEY0	A0A0V0X385	Guanine nucleotide-binding protein G(Q) subunit alpha.	Putative beta-arrestin.	0.651
Gnaq	gpb-1	A0A0V0WEY0	A0A0V0WNF8	Guanine nucleotide-binding protein G(Q) subunit alpha.	Guanine nucleotide-binding protein subunit beta-1.	0.998
Gnaq	gpc-1	A0A0V0WEY0	A0A0V0WIJ4	Guanine nucleotide-binding protein G(Q) subunit alpha.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.986
Gnaq	grk-2	A0A0V0WEY0	A0A0V0X6A1	Guanine nucleotide-binding protein G(Q) subunit alpha.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.907
Gnaq	lrk-1	A0A0V0WEY0	A0A0V0W863	Guanine nucleotide-binding protein G(Q) subunit alpha.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.489
Gnaq	plcd3a	A0A0V0WEY0	A0A0V0W589	Guanine nucleotide-binding protein G(Q) subunit alpha.	Phosphoinositide phospholipase C.	0.769
Gnaq	unc-89-3	A0A0V0WEY0	A0A0V0XBM0	Guanine nucleotide-binding protein G(Q) subunit alpha.	Muscle M-line assembly protein unc-89.	0.800
Snap25	T06_7956	A0A0V0WCJ6	A0A0V0WMX2	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.498
Snap25	gpb-1	A0A0V0WCJ6	A0A0V0WNF8	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Guanine nucleotide-binding protein subunit beta-1.	0.567
Snap25	lrk-1	A0A0V0WCJ6	A0A0V0W863	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.600
Snap25	unc-89-3	A0A0V0WCJ6	A0A0V0XBM0	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Muscle M-line assembly protein unc-89.	0.536
T06_12457	Gnaq	A0A0V0X463	A0A0V0WEY0	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein G(Q) subunit alpha.	0.978
T06_12457	T06_7956	A0A0V0X463	A0A0V0WMX2	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.537
T06_12457	arr-1	A0A0V0X463	A0A0V0X385	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Putative beta-arrestin.	0.570
T06_12457	gpb-1	A0A0V0X463	A0A0V0WNF8	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein subunit beta-1.	0.992
T06_12457	gpc-1	A0A0V0X463	A0A0V0WIJ4	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.974
T06_12457	grk-2	A0A0V0X463	A0A0V0X6A1	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.802
T06_12457	plcd3a	A0A0V0X463	A0A0V0W589	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphoinositide phospholipase C.	0.578