Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Ubfd1Ubiquitin domain-containing protein UBFD1. (593 aa)    
Predicted Functional Partners:
Psmd12
26S proteasome non-ATPase regulatory subunit 12.
   
 0.973
Pros54
26S proteasome non-ATPase regulatory subunit 4.
   
 0.966
PSMC4
26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.
   
 0.964
Pros45
26S protease regulatory subunit 8.
   
 0.962
Psmd14
26S proteasome non-ATPase regulatory subunit 14.
   
 0.962
Srsf4
26S protease regulatory subunit 4; Belongs to the AAA ATPase family.
   
 0.962
rpn-6.1
Putative 26S proteasome regulatory subunit rpn-6.1.
   
 0.960
Psmd3
26S proteasome non-ATPase regulatory subunit 3.
   
 0.958
Psmd6
26S proteasome non-ATPase regulatory subunit 6.
   
 0.954
PSMD8
26S proteasome non-ATPase regulatory subunit.
   
 0.952
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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