Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Egln1Egl nine-like protein 1. (394 aa)    
Predicted Functional Partners:
T06_8481
Uncharacterized protein.
    
 0.991
hif-1
Hypoxia-inducible factor 1.
    
 0.991
T06_3658
Uncharacterized protein.
    
 0.935
pkc-2
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.890
cul-2
Cullin-2; Belongs to the cullin family.
     
 0.770
jub
LIM domain-containing protein jub.
    
  0.748
rbx1
RING-box protein 1.
     
 0.747
aha-1
Aryl hydrocarbon receptor nuclear translocator-like protein.
    
 
 0.740
thrb-b
Thyroid hormone receptor beta-A.
    
 
 0.736
hsp-6
Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.
      
 0.721
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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