Gusb protein (Trichinella sp. T6) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Gusb

Beta-glucuronidase. (637 aa)

Predicted Functional Partners:

Glb1

0.967

Naga

0.954

Sulf1

0.944

Hexa

0.921

ARF4

0.894

Gale

0.893

Ugdh

0.890

ugt-58

0.887

ugt-60

0.882

GBA

0.879

Your Current Organism:

Trichinella sp. T6

NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF4	Gusb	A0A0V0XA31	A0A0V0WN81	ADP-ribosylation factor 4; Belongs to the small GTPase superfamily. Arf family.	Beta-glucuronidase.	0.894
ARF4	Sulf1	A0A0V0XA31	A0A0V0X998	ADP-ribosylation factor 4; Belongs to the small GTPase superfamily. Arf family.	Extracellular sulfatase Sulf-1.	0.535
GBA	Glb1	A0A0V0WYN0	A0A0V0WDM3	Glucosylceramidase.	Beta-galactosidase.	0.936
GBA	Gusb	A0A0V0WYN0	A0A0V0WN81	Glucosylceramidase.	Beta-glucuronidase.	0.879
GBA	Sulf1	A0A0V0WYN0	A0A0V0X998	Glucosylceramidase.	Extracellular sulfatase Sulf-1.	0.767
GBA	ugt-58	A0A0V0WYN0	A0A0V0WXX0	Glucosylceramidase.	Putative UDP-glucuronosyltransferase ugt-58; Belongs to the UDP-glycosyltransferase family.	0.666
GBA	ugt-60	A0A0V0WYN0	A0A0V0XD42	Glucosylceramidase.	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.536
Gale	Gusb	A0A0V0X3E3	A0A0V0WN81	UDP-glucose 4-epimerase; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Beta-glucuronidase.	0.893
Gale	Naga	A0A0V0X3E3	A0A0V0WZ53	UDP-glucose 4-epimerase; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Alpha-galactosidase.	0.924
Gale	Ugdh	A0A0V0X3E3	A0A0V0X655	UDP-glucose 4-epimerase; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	0.968
Gale	ugt-58	A0A0V0X3E3	A0A0V0WXX0	UDP-glucose 4-epimerase; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Putative UDP-glucuronosyltransferase ugt-58; Belongs to the UDP-glycosyltransferase family.	0.500
Gale	ugt-60	A0A0V0X3E3	A0A0V0XD42	UDP-glucose 4-epimerase; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.500
Glb1	GBA	A0A0V0WDM3	A0A0V0WYN0	Beta-galactosidase.	Glucosylceramidase.	0.936
Glb1	Gusb	A0A0V0WDM3	A0A0V0WN81	Beta-galactosidase.	Beta-glucuronidase.	0.967
Glb1	Hexa	A0A0V0WDM3	A0A0V0X6M8	Beta-galactosidase.	Beta-hexosaminidase.	0.966
Glb1	Naga	A0A0V0WDM3	A0A0V0WZ53	Beta-galactosidase.	Alpha-galactosidase.	0.978
Glb1	Sulf1	A0A0V0WDM3	A0A0V0X998	Beta-galactosidase.	Extracellular sulfatase Sulf-1.	0.916
Gusb	ARF4	A0A0V0WN81	A0A0V0XA31	Beta-glucuronidase.	ADP-ribosylation factor 4; Belongs to the small GTPase superfamily. Arf family.	0.894
Gusb	GBA	A0A0V0WN81	A0A0V0WYN0	Beta-glucuronidase.	Glucosylceramidase.	0.879
Gusb	Gale	A0A0V0WN81	A0A0V0X3E3	Beta-glucuronidase.	UDP-glucose 4-epimerase; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.893