Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ceh-9Homeobox protein ceh-9. (204 aa)    
Predicted Functional Partners:
dyb-1
Dystrobrevin.
    
   0.687
Isy1
Pre-mRNA-splicing factor ISY1-like protein.
    
   0.687
tbx1-a
T-box transcription factor TBX1-A.
    
 
 0.604
HINFP
Histone H4 transcription factor.
    
   0.539
PPP1R21
Protein phosphatase 1 regulatory subunit 21.
    
   0.539
ZNF680
Zinc finger protein.
    
   0.539
T06_11236
Uncharacterized protein.
    
   0.539
GRAMD1B
GRAM domain-containing protein 1B.
      
 0.490
tbx20
T-box transcription factor TBX20.
    
 
 0.442
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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