Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sf3b3Splicing factor 3B subunit 3. (1221 aa)    
Predicted Functional Partners:
Snrnp200
U5 small nuclear ribonucleoprotein helicase.
   
 0.999
Prpf8
Pre-mRNA-processing-splicing factor 8.
   
 0.999
T06_313
PHD finger-like domain-containing protein 5B.
   
 0.998
sap-49
Splicing factor 3B subunit 4.
   
 0.998
sf3b1
Splicing factor 3B subunit 1.
   
 0.998
SF3B2
Splicing factor 3B subunit 2.
   
 0.998
T06_397
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.998
SF3A3
Splicing factor 3A subunit 3.
   
 0.998
Dhx15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.998
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.998
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.