Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NR2E3-2Photoreceptor-specific nuclear receptor. (550 aa)    
Predicted Functional Partners:
RERE
Arginine-glutamic acid dipeptide repeats protein.
    
 0.933
NR2E3
Photoreceptor-specific nuclear receptor.
     
 0.869
gei-8
Gex-3-interacting protein 8.
    
 0.851
T06_1492
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.792
epha4-a
Ephrin type-A receptor 4-A.
    
 0.736
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 
 0.726
CNOT3
CCR4-NOT transcription complex subunit 3.
      
 0.722
nhr-25
Nuclear hormone receptor family member nhr-25.
    
 0.706
PSME3
Proteasome activator complex subunit 3.
   
  0.662
PSME3-2
Proteasome activator complex subunit 3.
   
  0.662
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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