Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FANCMFanconi anemia group M protein. (1802 aa)    
Predicted Functional Partners:
FANCL
E3 ubiquitin-protein ligase FANCL.
    
 0.999
oxt
Xylosyltransferase oxt.
    
 0.999
ERCC1
DNA excision repair protein ERCC-1.
   
 0.998
TOP3A
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
    
 0.998
T06_7244
Uncharacterized protein.
   
 0.998
Faap24
Fanconi anemia-associated protein of 24 kDa.
   
 0.998
him-6
Bloom syndrome-like protein.
   
 0.998
ran-4
Putative nuclear transport factor 2.
    
 0.998
Xpac
DNA repair protein complementing XP-A cells-like protein.
    
 0.998
rmi1
RecQ-mediated genome instability protein 1.
   
 0.997
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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