Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CherpCalcium homeostasis endoplasmic reticulum protein. (593 aa)    
Predicted Functional Partners:
U2SURP
U2 snRNP-associated SURP motif-containing protein.
   
 0.999
RBM17
Splicing factor 45.
   
 0.996
Dhx15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.993
T06_313
PHD finger-like domain-containing protein 5B.
   
 0.985
Sf3a2
Splicing factor 3A subunit 2.
   
 0.983
PUF60
Poly(U)-binding-splicing factor PUF60.
   
 0.958
SF3A1
Splicing factor 3A subunit 1.
   
 0.958
U2af50
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.953
sap-49
Splicing factor 3B subunit 4.
   
 0.947
ddx46
Putative ATP-dependent RNA helicase DDX46.
   
 0.944
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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