Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rhpn2-aRhophilin-2-A. (778 aa)    
Predicted Functional Partners:
chmp4b
Charged multivesicular body protein 4b.
    
 0.944
rho-1
Ras-like GTP-binding protein rhoA.
    
 0.911
Vps4a
Vacuolar protein sorting-associated protein 4A; Belongs to the AAA ATPase family.
   
 0.854
Chmp3
Charged multivesicular body protein 3.
    
 0.809
chmp2a
Charged multivesicular body protein 2a.
    
 0.808
CHMP1B
Charged multivesicular body protein 1b.
    
 0.807
TSG101
Tumor susceptibility-like protein.
   
 0.805
T06_3337
TPX2 domain-containing protein.
   
 0.748
chmp7
Charged multivesicular body protein 7.
    
 0.738
DMD
Dystrophin.
    
   0.697
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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