Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rabep1Rab GTPase-binding effector protein 1. (438 aa)    
Predicted Functional Partners:
RABGEF1
Rab5 GDP/GTP exchange factor.
    
 0.995
RAB5A
Ras-related protein Rab-5A.
    
 0.984
RAB5B
Ras-related protein Rab-5B.
    
 0.884
AP1G1
AP-1 complex subunit gamma.
    
 
 0.882
T06_11318
Ras-related protein Rab-4B.
    
 
 0.880
RABGEF1-2
Rab5 GDP/GTP exchange factor.
    
 0.836
ITSN1
Intersectin-1.
    
 
 0.797
Rab35
Ras-related protein Rab-35.
    
 
 0.757
SAP4
Zinc finger A20 and AN1 domain-containing stress-associated protein 4.
    
 0.753
SAP6
Zinc finger A20 and AN1 domain-containing stress-associated protein 6.
    
 0.753
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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