Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRAPBRCA1-associated protein. (571 aa)    
Predicted Functional Partners:
KSR2
Kinase suppressor of Ras 2.
    
 0.973
UBB-2
Polyubiquitin-B.
 
  
 0.863
T06_8873
Polyubiquitin.
 
  
 0.855
UBC
Polyubiquitin.
    
 0.839
Ubc
Polyubiquitin-C.
    
 0.839
Ksr2
Kinase suppressor of Ras 2.
    
 0.800
BRAF
Serine/threonine-protein kinase B-raf.
    
 0.800
UBB
Polyubiquitin-B.
 
  
 0.764
RUB1
Nedd8-like protein RUB1.
    
 0.725
UBI1
Polyubiquitin.
    
 0.725
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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