Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PRDM1PR domain zinc finger protein 1. (708 aa)    
Predicted Functional Partners:
Suv39h1
Histone-lysine N-methyltransferase SUV39H1.
    
 0.940
bli-3
Dual oxidase 1.
   
 0.910
Sorbs1
Sorbin and SH3 domain-containing protein 1.
    
 0.906
E(z)
Histone-lysine N-methyltransferase E(Z).
    
 0.877
setd8-a
N-lysine methyltransferase SETD8-A.
    
 0.867
Kmt2b
Histone-lysine N-methyltransferase 2B.
    
 0.865
Kmt2e
Histone-lysine N-methyltransferase 2E.
     
 0.860
NGFR
Tumor necrosis factor receptor superfamily member 16.
    
  0.851
DOT1L
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
     
 0.848
Plod3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
     
 0.846
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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