STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCF3Transcription factor E2-alpha. (485 aa)    
Predicted Functional Partners:
ASCL4
Achaete-scute-like protein 4.
   
 0.955
SUM-1
Transcription factor SUM-1.
    
 0.941
arm
Armadillo segment polarity protein.
    
 0.909
arm-2
Armadillo segment polarity protein.
    
 0.909
hlh-6
Helix-loop-helix protein 6.
    
 0.838
LDB2
LIM domain-binding protein 2.
    
 0.837
twist1
Twist-related protein.
    
 
 0.834
ptf1a
Pancreas transcription factor 1 subunit alpha.
   
 0.832
hlh-4
Helix-loop-helix protein 4.
    
 0.831
hlh-13
Helix-loop-helix protein 13.
    
 0.831
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.