Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T06_5707L-cystatin. (152 aa)    
Predicted Functional Partners:
ctse-a
Cathepsin E-A; Belongs to the peptidase A1 family.
   
 0.618
T06_2104
Pepsin A; Belongs to the peptidase A1 family.
   
 0.618
T06_2754
Lysosomal aspartic protease; Belongs to the peptidase A1 family.
   
 0.618
BCL2
Apoptosis regulator Bcl-2.
     
 0.591
birc5.2
Baculoviral IAP repeat-containing protein 5.2.
     
 0.590
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.505
bcs1l
Mitochondrial chaperone BCS1.
      
 0.470
PSAP
Proactivator polypeptide.
   
 
 0.462
Lgmn
Legumain.
   
 
 0.451
Lgmn-2
Legumain.
   
 
 0.451
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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