Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr70WD repeat-containing protein 70. (603 aa)    
Predicted Functional Partners:
mog-1
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1.
    
 0.987
Cdc40
Pre-mRNA-processing factor 17.
   
  0.979
PPWD1
Peptidylprolyl isomerase domain and WD repeat-containing protein 1.
   
  0.972
CWC25
Pre-mRNA-splicing factor CWC25-like protein.
    
  0.970
Ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.970
Prpf19
Pre-mRNA-processing factor 19.
   
 0.942
T06_4504
Protein BUD31-like protein.
   
 
 0.934
cyn-4
Peptidyl-prolyl cis-trans isomerase 4.
   
  0.922
PPIL4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
  0.919
PPIL3
Peptidyl-prolyl cis-trans isomerase-like 3.
    
  0.919
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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