Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_8985DUF4604 domain-containing protein. (149 aa)    
Predicted Functional Partners:
EAPP
E2F-associated phosphoprotein.
    
   0.819
Ecd
Protein SGT1-like protein.
    
   0.781
T06_8778
Uncharacterized protein.
    
   0.776
Snrnp200
U5 small nuclear ribonucleoprotein helicase.
    
   0.772
T06_12874
Peptidyl-prolyl cis-trans isomerase E.
    
   0.768
WDR83
WD repeat domain-containing protein 83.
    
   0.749
T06_12953
Uncharacterized protein.
   
   0.746
T06_4504
Protein BUD31-like protein.
    
   0.709
Prpf8
Pre-mRNA-processing-splicing factor 8.
    
   0.687
SNW1
SNW domain-containing protein 1.
    
   0.684
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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