Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CrbnProtein cereblon. (410 aa)    
Predicted Functional Partners:
DDB1
DNA damage-binding protein 1.
    
 0.998
rbx1
RING-box protein 1.
    
 0.998
CUL4B
Cullin-4B; Belongs to the G-protein coupled receptor Fz/Smo family.
    
 0.997
csnk1a1
Casein kinase I isoform alpha; Belongs to the protein kinase superfamily.
    
 
 0.940
cops8
COP9 signalosome complex subunit 8.
    
 
 0.931
VPRBP
Protein VPRBP.
    
 0.930
CSN5
COP9 signalosome complex subunit 5.
    
 
 0.930
Cops4
COP9 signalosome complex subunit 4.
    
 
 0.929
COPS3
COP9 signalosome complex subunit 3.
    
 
 0.927
CSN1b
COP9 signalosome complex subunit 1.
    
   0.913
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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