Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bloc1s1Biogenesis of lysosome-related organelles complex 1 subunit 1. (139 aa)    
Predicted Functional Partners:
bloc1s2
Biogenesis of lysosome-related organelles complex 1 subunit 2.
   
 0.999
T06_12055
KxDL motif-containing protein.
    
 0.998
LOH12CR1
Loss of heterozygosity 12 chromosomal region 1 protein.
    
 0.995
Gak
Cyclin-G-associated kinase.
    
  0.954
pi4k2b
Phosphatidylinositol 4-kinase type 2-beta.
     
 0.951
p
Hermansky-Pudlak syndrome 5-like protein.
     
 0.926
Snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
     
 0.922
Stx12
Syntaxin-12; Belongs to the syntaxin family.
   
 
 0.921
SLC10A2
Ileal sodium/bile acid cotransporter.
     
 0.914
hpd
4-hydroxyphenylpyruvate dioxygenase.
     
  0.790
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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