kin-18 protein (Trichinella sp. T6) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

kin-18

Serine/threonine-protein kinase SULU; Belongs to the PI3/PI4-kinase family. (3103 aa)

Predicted Functional Partners:

isoc2

0.925

ire-1

0.727

WWC2

0.699

svkA

0.692

STK4

0.683

NUDC

0.640

BUB1

0.551

ndel1-b

0.539

POP1

0.536

KIF18B

0.535

Your Current Organism:

Trichinella sp. T6

NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BUB1	KIF18B	A0A0V0XCU4	A0A0V0W5N5	Mitotic checkpoint serine/threonine-protein kinase BUB1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.977
BUB1	NUDC	A0A0V0XCU4	A0A0V0W9H8	Mitotic checkpoint serine/threonine-protein kinase BUB1.	Nuclear migration protein nudC.	0.947
BUB1	POP1	A0A0V0XCU4	A0A0V0XAM0	Mitotic checkpoint serine/threonine-protein kinase BUB1.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	0.712
BUB1	kin-18	A0A0V0XCU4	A0A0V0WSH3	Mitotic checkpoint serine/threonine-protein kinase BUB1.	Serine/threonine-protein kinase SULU; Belongs to the PI3/PI4-kinase family.	0.551
BUB1	ndel1-b	A0A0V0XCU4	A0A0V0XD14	Mitotic checkpoint serine/threonine-protein kinase BUB1.	Nuclear distribution protein nudE-like 1-B.	0.907
KIF18B	BUB1	A0A0V0W5N5	A0A0V0XCU4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Mitotic checkpoint serine/threonine-protein kinase BUB1.	0.977
KIF18B	NUDC	A0A0V0W5N5	A0A0V0W9H8	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Nuclear migration protein nudC.	0.787
KIF18B	POP1	A0A0V0W5N5	A0A0V0XAM0	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	0.955
KIF18B	kin-18	A0A0V0W5N5	A0A0V0WSH3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Serine/threonine-protein kinase SULU; Belongs to the PI3/PI4-kinase family.	0.535
KIF18B	ndel1-b	A0A0V0W5N5	A0A0V0XD14	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Nuclear distribution protein nudE-like 1-B.	0.922
NUDC	BUB1	A0A0V0W9H8	A0A0V0XCU4	Nuclear migration protein nudC.	Mitotic checkpoint serine/threonine-protein kinase BUB1.	0.947
NUDC	KIF18B	A0A0V0W9H8	A0A0V0W5N5	Nuclear migration protein nudC.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.787
NUDC	POP1	A0A0V0W9H8	A0A0V0XAM0	Nuclear migration protein nudC.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	0.985
NUDC	kin-18	A0A0V0W9H8	A0A0V0WSH3	Nuclear migration protein nudC.	Serine/threonine-protein kinase SULU; Belongs to the PI3/PI4-kinase family.	0.640
NUDC	ndel1-b	A0A0V0W9H8	A0A0V0XD14	Nuclear migration protein nudC.	Nuclear distribution protein nudE-like 1-B.	0.973
POP1	BUB1	A0A0V0XAM0	A0A0V0XCU4	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	Mitotic checkpoint serine/threonine-protein kinase BUB1.	0.712
POP1	KIF18B	A0A0V0XAM0	A0A0V0W5N5	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.955
POP1	NUDC	A0A0V0XAM0	A0A0V0W9H8	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	Nuclear migration protein nudC.	0.985
POP1	kin-18	A0A0V0XAM0	A0A0V0WSH3	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	Serine/threonine-protein kinase SULU; Belongs to the PI3/PI4-kinase family.	0.536
POP1	ndel1-b	A0A0V0XAM0	A0A0V0XD14	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.	Nuclear distribution protein nudE-like 1-B.	0.986