Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Smek1Serine/threonine-protein phosphatase 4 regulatory subunit 3A. (919 aa)    
Predicted Functional Partners:
PPP4R2r
Serine/threonine-protein phosphatase 4 regulatory subunit 2.
   
 0.998
ppp4cb
Serine/threonine-protein phosphatase.
   
 0.997
T06_12501
Uncharacterized protein.
   
 0.982
Ppx1
Serine/threonine-protein phosphatase.
   
 0.959
PPP2R4
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
 
 0.922
Supt5h
Transcription elongation factor SPT5.
    
 
 0.891
foxo
Forkhead box protein O.
    
 0.874
POLR3H
DNA-directed RNA polymerase III subunit RPC8.
    
   0.824
Rpa2
Replication protein A 32 kDa subunit.
    
 
 0.814
UBP19
Ubiquitin carboxyl-terminal hydrolase 19.
   
 
  0.796
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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