Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
onecutOne cut domain family member. (632 aa)    
Predicted Functional Partners:
FAM214A
DUF4210 domain-containing protein.
      
 0.720
cnd-1
Neurogenic differentiation factor 1.
   
 0.691
Wdr7
WD repeat-containing protein 7.
      
 0.679
Wdr7-2
WD repeat-containing protein 7.
      
 0.679
ptf1a
Pancreas transcription factor 1 subunit alpha.
   
  
 0.650
thrb-b
Thyroid hormone receptor beta-A.
    
 
 0.566
NEUROG3
Neurogenin-3.
    
 0.564
acj6
POU domain protein.
    
 
 0.561
vsx1
Visual system homeobox 1.
      
 0.534
foxa2-a
Forkhead box protein A2-A.
    
 
 0.524
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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