Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crbSlit-like protein 1 protein. (833 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.933
Ten-m
Teneurin-m.
    
 0.917
DAG1
Dystroglycan.
    
 0.916
unc-89-3
Muscle M-line assembly protein unc-89.
   
 0.889
oxt
Xylosyltransferase oxt.
    
 0.883
unc-10
Rab-3-interacting molecule unc-10.
    
 0.882
Nid1
Nidogen-1.
   
 0.878
PTK7
Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.869
pat-3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.834
C05D9.3
Putative integrin beta-like protein.
    
 0.834
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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