Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hayDNA excision repair protein haywire. (1335 aa)    
Predicted Functional Partners:
Mnat1
CDK-activating kinase assembly factor MAT1.
    
 0.999
CDK7
Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.
    
 0.999
ERCC4
DNA repair endonuclease XPF.
  
 0.999
GTF2H3
General transcription factor IIH subunit 3.
   
 0.999
ERCC2
TFIIH basal transcription factor complex helicase XPD subunit.
   
 0.998
Xpac
DNA repair protein complementing XP-A cells-like protein.
    
 0.998
ERCC1
DNA excision repair protein ERCC-1.
     
 0.996
Gtf2h2
General transcription factor IIH subunit.
    
 0.996
mus210
DNA repair protein complementing XP-C cells-like protein.
   
 0.996
Ercc8
DNA excision repair protein ERCC-8.
     
 0.996
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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