Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DNAJC10DnaJ-like protein subfamily C member 10. (1623 aa)    
Predicted Functional Partners:
dnj-20
DnaJ-like protein dnj-20.
     
 0.865
DNAJC3
DnaJ-like protein subfamily C member 3.
     
 0.865
ND4
NADH-ubiquinone oxidoreductase chain 4.
    
 0.691
bloc1s1
Biogenesis of lysosome-related organelles complex 1 subunit 1.
     
  0.656
bloc1s2
Biogenesis of lysosome-related organelles complex 1 subunit 2.
     
  0.620
ASMTL
N-acetylserotonin O-methyltransferase-like protein.
      
 0.483
CSPG4
Chondroitin sulfate proteoglycan 4.
      
 0.469
pts
6-pyruvoyl tetrahydrobiopterin synthase.
     
  0.411
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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