Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hrp-1Heterogeneous nuclear ribonucleoprotein A1. (333 aa)    
Predicted Functional Partners:
Myef2
Myelin expression factor 2.
   
 0.993
Ptbp3
Polypyrimidine tract-binding protein 3.
   
 0.985
HNRNPF
Heterogeneous nuclear ribonucleoprotein F.
   
 0.979
Hnrnpul1
RING finger protein.
   
 0.972
PCBP3
Poly(RC)-binding protein 3.
   
 0.965
DDX5
Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
   
 0.960
U2af50
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.936
Cbp80
Nuclear cap-binding protein subunit 1.
    
 0.923
Hnrnpl
Heterogeneous nuclear ribonucleoprotein L.
   
 0.908
SRSF2
Serine/arginine-rich splicing factor 2.
  
 0.902
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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