Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ost-1Sparc. (292 aa)    
Predicted Functional Partners:
bmp4
Bone morphogenetic protein 4.
   
 0.772
T06_15738
Vitellogenin.
   
 
 0.730
Smoc1
Sparc-related modular calcium-binding protein 1.
   
 
 0.721
RUNX1
Runt-related transcription factor 1.
      
 0.691
apl-1
Beta-amyloid-like protein.
   
 0.656
Spock3
Testican-3.
   
  
 0.626
HSPG2
Basement membrane proteoglycan.
   
  
 0.614
T06_8285
Protease inhibitor kunitoxin-Tel1.
   
  0.591
Fam20c-2
Extracellular serine/threonine protein kinase FAM20C.
     
 0.571
Nid1
Nidogen-1.
   
  
 0.558
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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