Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_2695Uncharacterized protein. (360 aa)    
Predicted Functional Partners:
T06_12171
Uncharacterized protein.
     
  0.800
T06_2385
Acetylcholine receptor subunit alpha-like 1.
    
 0.766
acr-16
Acetylcholine receptor subunit alpha-type acr-16; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
  0.700
T06_2981
Neur_chan_LBD domain-containing protein.
    
  0.700
T06_11058
Uncharacterized protein.
    
  0.700
Kdr
Vascular endothelial growth factor receptor 2.
      
 0.697
cup-4
Acetylcholine receptor-like protein cup-4; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
  0.658
Chrna6
Neuronal acetylcholine receptor subunit alpha-6; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
  0.612
Ppp1r7
Protein phosphatase 1 regulatory subunit 7.
     
 0.589
CPT1A
Carnitine O-palmitoyltransferase 1, liver isoform.
     
  0.583
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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