Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZC84.1-9Uncharacterized protein. (1635 aa)    
Predicted Functional Partners:
Msh2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.525
MLH1
DNA mismatch repair protein Mlh1.
      
 0.500
T06_16777
Uncharacterized protein.
    
  0.469
Prss30
Serine protease 30.
    
  0.469
Cela2a-4
Chymotrypsin-like elastase family member 2A.
    
  0.469
Prss8
Prostasin; Belongs to the peptidase S1 family.
    
  0.469
Cela2a-6
Chymotrypsin-like elastase family member 2A.
    
  0.469
Tmprss12
Transmembrane protease serine 12; Belongs to the peptidase S1 family.
    
  0.469
TMPRSS9
Transmembrane protease serine 9.
    
  0.469
Cela2a-7
Chymotrypsin-like elastase family member 2A.
    
  0.469
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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