Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
T06_15623DUF89 domain-containing protein. (457 aa)    
Predicted Functional Partners:
VhaSFD
V-type proton ATPase subunit H.
    
   0.859
T06_180
V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
    
 
 0.785
T23F11.1
PPM-type phosphatase domain-containing protein.
    
   0.688
mlc-4
Nucleolar MIF4G domain-containing protein 1.
   
    0.565
RMND1
Required for meiotic nuclear division protein 1-like protein.
   
  
 0.519
Max
Protein max.
      
 0.518
PIN1
Peptidyl-prolyl cis-trans isomerase.
      
 0.470
T06_4066
Uncharacterized protein.
      
 0.442
lgg-1
Protein lgg-1.
   
   0.437
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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