Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cps-6Ubiquitinyl hydrolase 1. (1061 aa)    
Predicted Functional Partners:
fen1
Flap endonuclease 1.
   
 
 0.938
ELAC2
Zinc phosphodiesterase ELAC protein 2.
   
 
 0.910
AIFM1
Apoptosis-inducing factor 1, mitochondrial.
    
 
 0.909
T06_8690
Uncharacterized protein.
    
 
 0.909
Pum2
Pumilio-like protein 2.
    
   0.870
birc5.2
Baculoviral IAP repeat-containing protein 5.2.
    
 
 0.859
Fut8
Alpha-(1,6)-fucosyltransferase; Belongs to the glycosyltransferase 23 family.
     
  0.844
Peo1
Twinkle protein, mitochondrial.
    
 
 0.791
Dnajc17
DnaJ-like protein subfamily C member 17.
   
   0.791
gpd-1
Glyceraldehyde-3-phosphate dehydrogenase.
   
  
 0.722
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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