Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MARCH5E3 ubiquitin-protein ligase MARCH5. (669 aa)    
Predicted Functional Partners:
Marf
Transmembrane GTPase Marf; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.992
Ube2w
Ubiquitin-conjugating enzyme E2 W.
   
   0.892
UBB
Polyubiquitin-B.
    
  0.886
RpL40
Ubiquitin-60S ribosomal protein L40.
     
  0.824
UBA52
Ubiquitin-60S ribosomal protein L40.
     
  0.824
dyn-1
Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.748
DNM1L
Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.748
let-70
Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.746
SLC25A46
Solute carrier family 25 member 46; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
 0.732
Denr
Density-regulated protein; Belongs to the DENR family.
    
 
 0.713
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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